AspGD Search Options
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All the search
options listed below search for information within the Aspergillus Genome Database
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AspGD Basic Searches
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Note: All searches are case insensitive; wildcard
character (*) ok; only last names of colleagues are searched |
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AspGD Quick Search: | |
Use a keyword to simultaneously
search by major categories of information in AspGD (gene name,
locus description, GO
terms, basic phenotype information, locus summary notes, colleagues, authors, orthologs and best hits in S. cerevisiae, S. pombe, and other Aspergillus species, PubMed IDs, and GO IDs. Examples: 'VeA', 'AN1052', 'transcription', 'Smith'. The asterisk character (*) may be used as a wild card.
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AspGD Text
Search: |
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Use a keyword to simultaneously
search all of the categories of information in AspGD that are
included in the Quick Search, plus locus history notes, gene name descriptions, and abstracts.
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AspGD Advanced Searches |
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Advanced Search
Find a chromosomal feature (e.g., gene, ORF) based on selected criteria (e.g., chromosome
number, GO-Slim terms, etc.) |
Expanded Phenotype Search
Search the text of all phenotype
information to find phenotypes of interest and view the genes
associated with them, or browse the entire list of phenotype terms |
GO Slim Mapper
This tool determines to
which GO-slim terms a set of Aspergillus genes is annotated |
GO Term Finder
This tool determines the signficant GO terms that a set of Aspergillus genes shares in common |
Batch Download
Simultaneous retrieval of multiple types of data for a list of gene or feature names
Specialized Gene
and Sequence Searches
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Gene/Sequence Resources (Get Sequence)
Retrieve, display, and analyze a gene or
sequence in many ways, such as protein translation and
restriction mapping
BLAST
Compare any query sequence against various
Aspergillus datasets
Sybil: Comparative Genomics Tool
Search and analyze comparative genomics data from 10 Aspergillus species
GBrowse Genome Browser
for A. nidulans FGSC A4
for A. fumigatus Af293
for A. niger CBS 513.88
for A. oryzae RIB40
View and navigate genomic sequence
JBrowse Large-Scale Data Browser
for A. nidulans FGSC A4
for A. fumigatus Af293
for A. niger CBS 513.88
for A. oryzae RIB40
View and navigate large-scale data, including RNA-Seq
GenomeView Large-Scale Data Browser
Please note: GenomeView may take a long time to load, and it displays incompatibilities with some web browsers and versions of Java.
for A. nidulans FGSC A4 RNA-Seq
for A. fumigatus Af293 RNA-Seq
for A. fumigatus Af293 genomic variation
for A. niger CBS 513.88 RNA-Seq
for A. oryzae RIB40 RNA-Seq
View and navigate large-scale data
Chromosome History Search
View the complete sequence and annotation
history of each chromosome
Summary of Genome Versions
View the complete history of sequence and
annotation changes for each genome
Pattern Matching
Locate DNA or protein sequence patterns
Design Primers
Design sequencing and PCR primers
Restriction Analysis
Display the restriction map for a sequence
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Search Orthologs
and Best Hits: |
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Search orthologs or best
hits to S. cerevisiae genes or genes in other Aspergillus species by gene name. Case insensitive and wildcard character (*) searches
are allowed.
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Search AspGD Web Pages |
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Search Aspergillus Literature |
Search Literature in AspGD
View AspGD's annotated literature guide for any gene
List of genome-wide analysis papers
Link to a list of genome-wide analysis
papers (e.g., microarray analysis publications) stored in
AspGD
Search Colleague Information
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Search AspGD Colleagues
Search contact information submitted to
AspGD by Aspergillus researchers
Aspergillus Laboratories
Links to PIs of laboratories that study Aspergillus |
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AspGD Copyright © 2008-2013 The Board of Trustees, Leland
Stanford Junior University, and Broad Institute.Permission to
use the information contained in this database was given by the
researchers/institutes who contributed or published the
information. Users of the database are solely responsible for
compliance with any copyright restrictions, including those applying
to the author abstracts. Documents from this server are provided
"AS-IS" without any warranty, expressed or implied.
To cite AspGD,
please use the following
reference: Cerqueira GC, Arnaud MB, Inglis DO, Skrzypek MS, Binkley G, Simison M, Miyasato SR, Binkley J, Orvis J, Shah P, Wymore F, Sherlock G, Wortman JR (2013). The Aspergillus Genome Database (AspGD): multispecies curation and incorporation of RNA-Seq data to improve structural gene annotations. Nucleic Acids Res. 42(Database issue):D705-D710; see
How to cite AspGD.
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