The PDB Homolog Page presents information for proteins of known structure homologous to the specified AspGD protein, identified in a BLASTP search of The RCSB Protein Databank (PDB). All BLAST hits with a P-value less than 1E-5 are displayed. The search results and associated informational links are displayed in a large table.
The top of the page provides a site-wide quick search, links to the major AspGD informational resources, and a bar with links to popular tools, such as a local BLAST search.
The Results Table (PDB Blast Hits) presents information in 4 columns:
This column summarizes the homologous PDB structures in two sub-columns:
This column identifies the source organism(s) for the PDB homolog.
This column summarizes the alignment between the query protein and PDB homolog in four sub-columns:
This column provides links to external resources providing additional information on the 3D-structure of the homolog. The resources are:
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AspGD Copyright © 2008-2013 The Board of Trustees, Leland Stanford Junior University, and Broad Institute.
Permission to use the information contained in this database was given by the researchers/institutes who contributed or published the information. Users of the database are solely responsible for compliance with any copyright restrictions, including those applying to the author abstracts. Documents from this server are provided "AS-IS" without any warranty, expressed or implied.
To cite AspGD, please use the following reference: Cerqueira GC, Arnaud MB, Inglis DO, Skrzypek MS, Binkley G, Simison M, Miyasato SR, Binkley J, Orvis J, Shah P, Wymore F, Sherlock G, Wortman JR (2013). The Aspergillus Genome Database (AspGD): multispecies curation and incorporation of RNA-Seq data to improve structural gene annotations. Nucleic Acids Res. 42(Database issue):D705-D710; see How to cite AspGD.